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Expanding and Modernizing the Salmon Ecosystem

Project Salmon Ecosystem
Funding Cycle 5

Proposal Summary

To expand the capabilities and improve the robustness and maintainability of the salmon software ecosystem, further widening its scope of applicability and improving the user and developer experience.

Project

Salmon Ecosystem

This project aims to modernize, improve and expand the set of open source tools in the salmon ecosystem (SE), whose core tools comprise cuttlefish, pufferfish, salmon, and alevin-fry. The goal is to improve SE’s support for analysis on large reference collections and new bulk and single-cell sequencing technologies.

Key Personnel

Robert Patro

Affiliation

University of Maryland

GitHub Handle

COMBINE-lab
Jason Fan

Affiliation

University of Maryland

GitHub Handle

theJasonFan
Jamshed Khan

Affiliation

University of Maryland

GitHub Handle

jamshed

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