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Generic Segmentation Tool For Different Modalities

Award napari Plugin Accelerator

Project Summary

This project will develop a generic segmentation tool able to segment cells imaged via different imaging modalities with membrane/cytoplasm/nuclei markers. The plugin will additionally  fuse different views coming out of light sheet imaging to create a fused view of the raw and segmented images . The team will improve the user experience by extending the standard Jupyter Notebook environment to that of a napari plugin environment. Once complete, the project aims to host training about the new plugin and spread awareness of napari and its capabilities.


Principal Investigator
Varun Kapoor, PhD
Varun Kapoor, PhD