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Single-Cell RNA-sequencing Tools to Evaluate and Enhance Experimental Replicability of the Human Cell Atlas

Focus Gastrointestinal

Project Goal

To create single-cell RNA-sequencing benchmarking and multiplexing technologies to enable standardization of the Human Cell Atlas, ensuring rigor and reproducibility.

Results & Resources

The Morris lab developed a tool to label cells with an index (CellTag) delivered via lentiviral transduction. Many resources for this workflow have been made available, including protocols, CellTag libraries, a visualization tool for exploration, the data produced and used for the visualization, a computational workflow, and a preprint describing their work.


Lead Investigator

Samantha Morris
Samantha Morris