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bcbio-nextgen: Reproducible, Community Developed Analysis Pipelines

Project bcbio-nextgen
Funding Cycle 5

Proposal Summary

To provide ongoing maintenance and community support for the bcbio-nextgen toolkit, focusing on existing variant calling functionality and improving the epigenomic pipelines.



bcbio-nextgen is a Python-based framework that contains a set of validated, community developed, scalable and reproducible NGS pipelines designed for analysis of high-throughput next generation sequencing data. This project will preserve bcbio-nextgen as a valuable community resource through ongoing maintenance and community support, and add new features that will enhance bcbio-nextgen’s variant calling and epigenomic pipelines.

Key Personnel

Shannan Ho Sui
Sergey Naumenko